PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618948.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 279aa    MW: 31738.6 Da    PI: 6.141
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-142067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l ++    G g+W+ +a+  g+ R++k+c++rw +yl
   XP_013618948.1 20 KGLWSPEEDSKLMQYMITNGQGCWSDVAKNAGLQRCGKSCRLRWINYL 67
                     678*******************************************97 PP

2Myb_DNA-binding50.64.4e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+++ +  lG++ W+ Ia++++ gRt++++k++w++
   XP_013618948.1  73 RGAFSPQEEELIIRFHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 116
                      89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8041567IPR017930Myb domain
SuperFamilySSF466898.61E-2818114IPR009057Homeodomain-like
SMARTSM007173.0E-111969IPR001005SANT/Myb domain
PfamPF002499.7E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-232174IPR009057Homeodomain-like
CDDcd001673.05E-92367No hitNo description
PROSITE profilePS5129424.9268122IPR017930Myb domain
SMARTSM007179.5E-1672120IPR001005SANT/Myb domain
PfamPF002498.8E-1573116IPR001005SANT/Myb domain
CDDcd001673.33E-1175115No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2575123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MMRKPEVANV VTHQVKKMKK GLWSPEEDSK LMQYMITNGQ GCWSDVAKNA GLQRCGKSCR  60
LRWINYLRPD LKRGAFSPQE EELIIRFHSI LGNRWSQIAA RLPGRTDNEI KNFWNSTIKK  120
RLKKMSDTSN LVNNSSSSPN ASDSSSNSTT SLEFKDIIGS FMSFQEQGFV NPSLTNMPTN  180
NNPFPAPQLL SHPYNDDFTP YIDSFCGVNT GVQGELYFPP LECEGDRYKA DITNHLDDDM  240
NTNGAGNVPE GVRMEEYWDL DQLMNTEAPS FYFNFKQSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28201227108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382830.0KF738283.1 Brassica napus MYB transcription factor 46 (MYB46.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618948.10.0PREDICTED: transcription factor MYB46-like
SwissprotQ9LXV21e-156MYB46_ARATH; Transcription factor MYB46
TrEMBLA0A0D3AIR40.0A0A0D3AIR4_BRAOL; Uncharacterized protein
STRINGBra006166.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61152347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-152myb domain protein 46